UPDATED FOR TAX YEAR 2019
You won't be penalized. You filed your return and authorized the payment before the filing deadline (May 1 in VA). Because of the COVID virus, VA has extended the deadline for filing and payment until June 1, 2020.
The state may not be able to debit your payment until after the deadline, due to high e-filing volume. In addition, it can take your bank another few days to post the debit to your account.
[Edited | 4/15/2020 | 1:45pm PDT]
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