Again and still ... do NOT NOT NOT amend the return until the IRS has finished doing whatever they are doing with your return. Column A of the amended return MUST reflect the original return figures OR the IRS corrected figures and until the IRS completes the review you will not know what those amounts will be.
This may be one of those times when paying for some professional assistance may be needed depending on the final outcome of the situation. Wait until the dust settles before you stir the pot again.
