Filing 1040X - Refund to Now Owe

I filed my 2016 taxes and received a refund of $7k.  Unfortunately, I overlooked a 1099-R withdrawal on the original filing.  I also neglected to add a dependent (parent) to the return who lives with me.

 

Now that I have completed the entries (1099-R & dependent) in the 1040X TurboTax shows I owe $14k.  I am wondering if the amount shown includes the $7k the IRS originally refunded me?