If you've had an employee all these years you would be filing Form 941 each quarter and paying in the payroll taxes each quarter as well.
Form 941 is not part of the income tax return or program, you would need to be using Quick Employer Forms to prepare the 941 forms each quarter, and the annual 940 at year end, as well as any state payroll reports required on a quarterly basis as well.
Year end you also file a W3 along with the W2 to the IRS and of course issue your employee the W2 as well.
"but the payment was calculated in the amount that your program informed me that I owed to the IRS"
Which payment are you referring to? What you pay along with your 1040 tax return filing is NOT related to the 941 employee payroll taxes.
♪♫•*¨*•.¸¸♥Lisa♥ ¸¸.•*¨*•♫♪
