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After you file

If you amended return has an adjusted status this means "The processing of your Form 1040X- Amended Tax Return resulted in an adjustment to your account. An adjustment may result in a refund, balances due, or no tax change".

The processing of your amended return is not finished until you receive a "complete" status when checking the Where's my Amended Return tool: http://www.irs.gov/Filing/Individuals/Amended-Returns-%28Form-1040-X%29/Wheres-My-Amended-Return- 

Until your status is "complete" you may still receive notifications and communication from the IRS based on your amended return.

You should try contacting the IRS via 866-464-2050 or 1-800-829-1040 for more information regarding your amended return and refund.