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After you file
I think the original payment should be reported on Line 25a, even though it says it is for estimated payments and an amount applied from the prior year. Then you can include Line 25a in your list of differences between the original return and the amended return. And your explanation of that difference is the payment made with the original return. That way the amended 1041 will flow down to the updated refund amount or the updated balance due.
‎June 7, 2019
4:36 PM