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take the muni amortization but make sure it's entered in the correct section of the 1099-INT.  or perhaps even easier is just to net the muni interest with the muni amortization. mini interest does not show up on schedule B and only the net shows in box 2a of the 1040

 

 

 

all non-covered means is that certain info is not reported to the iRS. this has no effect on the tax laws for mun bonds.