You are correct in that a rollover of the type you describe should have the word "Rollover" on line 5a of the Form 1040. Did you import your 1099-R into TurboTax? There is the option to manually enter your 1099-R information into TurboTax but knowing how you entered your 1099-R may help us better understand what took place.
Also, did you see the page Tell us if you moved the money through a rollover or conversion? If yes, did you choose the first option I rolled over some or all of it to an IRA or other retirement account within the time limits (normally 60 days).
@Shakes0
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