As long as you lived in Virginia all year, you have to assume the 5% is considered Virginia income.
So, that means enter the California information, then add another line for VA. Enter the smaller income amount and $0 withholding. If you have to enter a state tax ID number, use the EIN as the state tax ID number.
When you do your state returns, prepare the California non-resident return first. You will get a credit on your Virginia tax return for the amount of tax kept by California.
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