It is possible in the interview section that you indicated that you were electing S Corporation status in the current year, that is the only reason I would know that the form 2553 would be populated. You don't need to submit the form if you have already been given permission to be an S corporation.
I suggest you use the Forms menu option on your menu bar to bring up the form 2553 on your screen. Then, you should be able to delete the form by clinking on the box on the bottom of it that says Delete Form. That may resolve your issue.
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