"Can I still pay by check if it said do not file. " Of course. I do not know why the form says "DO NOT FILE" (this usually means that it has not been made "available" in the TurboTax system. This may be an issue of updating your desktop software.
In any case, the state MO-1040V can be found here online, which you can print and mail with your check. Or you can pay online here.
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