Get your taxes done using TurboTax

I did the same thing!  It's easy, just enter both 1098s.  TurboTax will help by asking questions about the two, is this like:  Is this your primary residence?  Did you refinance? etc, as you proceed!  Just make sure you use all the info off of each 1098 including the Account numbers and Company/Bank name to differentiate between them.  I entered the original loan first then the refi.