If you already filed and TurboTax is showing an amount due, that is the total of everything you entered. The 1099 and the W2 are included in that ''federal amount due'' number. When you sign in and your return is already filed, you have to scroll down to the bottom of that page to see your tax return. Print a copy to view the details.
You should see your W-2 income on Line 1 and your 1099 income will be on Line 8. The total tax on your income is Line24. Any tax payments you made already (Box 2 of your w-2) will be included on Line 33. The amount you owe (or is refunded to you) is the difference between Line 24 and 33.
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