This would be a question to ask Quick Books customer support and see how you can report the specific identification method rather than using FIFO or LIFO in evaluating inventory. You may be able to adjust COGS by evaluating the amount of your ending inventory using the specific identification method but check with QB first to see if there is a much easier way. Please view this informative article regarding the specific identification method. QB customer support is at 800-446-8848.
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