IRS sent a check for the amount I paid in estimated taxes. When I look at my 1040 in TurboTax, it lists my estimated payments as part of my withholding. Do I void it?

It looks like TurboTax didn’t properly create a 1040 Schedule D for my 2019 return. Looking at my 2018 return, it put these estimated tax payments in a separate section (Schedule 5), and the corresponding total as a separate line than “W-2 withheld”. Basically, I owe this money that the IRS tried to refund—should I just void the check, or should I try and contact them or submit a correction?