I accidentally paid my state estimated quarterly taxes to the federal website all year. Now I owe the state plus late fee. Any way to clear this mistake up?

I signed up to pay my estimated quarterly taxes through the federal website. This was the first year I had to do this and I misunderstood where to make the payments for my state taxes. I paid all four quarters estimated state taxes through the federal site rather than the state site. Now the state is asking for the quarterly estimates and a late fee. Is there any way to clear this up or have those payments I did make go towards what the state is asking for? Otherwise, I’m not sure what those payments count towards. 


Thank you.