I too am having the same issue. It thinks I have duplicate 1099-Rs even though one is in my name and the other is in my wife's name. Both are for the same amount from the same financial institution. However, in our case, this was done as part of a back-door Roth IRA conversion, so I'm not sure if changing the amounts by $0.01 will alter things since I converted the full $6000 limit for each of us.
I can't report $6000.01 since that is technically over the IRS contribution limit for a Roth IRA. And a contribution of $5999.99 won't match up with the $6000 conversion that appears in the Retirement and Investments subsection under Deductions & Credits. I'm not sure if making that change works in my specific instance.
This situation is frustrating since I've had the exact same seemingly "duplicate 1099-R's" for the past several years and it has never been rejected by the IRS. Seems like some sort of error on either their end of Turbotax's that wasn't there in previous years.
