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First, I think the 930,000 / 1,100,000 seems correct under the 1,000,000 grandfather provision on loan originated before December 16, 2017.

 

I doubt TT calculations are sophisticated enough to find the nuance of the 930,000/1,110,000 as TT doesn't even handle refinancing correctly.  

 

I would calculate 930/1100 percentage of interest paid manually and compare to what TT says.  If different I would enter the 930/1100  time interest paid as override.  If IRS questions you have calculations and intent to enter accurately.  

 

I suspect TT will ask beginning balnce and then ending balance and will be aggressive and calculate interest deductible and 1,000,000/1,100,000 and calculate deduction from there.  TT won't recognize 930,000 nuance.