Do NOT add $1.00. The problem appears to be the IRS/TTEfile handling of the underlying form 8606 (generated from the 1099-R). If you add $0.01 (a penny) your final Tax Return will still be accurate and correct, since it rounds all values to the dollar. So just add a penny to one of the 1099-Rs that have the same amount and the IRS accepts the file. A potential course of action (I do not offer tax advice). First make a PDF copy of the file that the IRS is rejecting (thus the underlying support forms are correct), then add 0.01 to one of the 1099-Rs with the same value, then refile.
