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I saw on a thread from last year that making the living person as the as the 1st (primary ) person on the tax return resulted in their Federal tax return being accepted right away. I gave this a try and it worked. 

In the personal info section ( Windows Version for me  ),  I swapped the entries and made the living parent as the one listed first and my deceased parent as the second person.   I then also had to go in and swap the  entries relating to income etc. For instance, for the 1099s etc., I had to swap who they were belonged to . In the SSA-1099 section , I  switched the positions of the taxpayer / spouse figures.  Evidently TT does not relate the income documents by name or SSN, its purely positional ( taxpayer /spouse ) which makes you have to switch those  since they were already entered . Lastly in the E-file identification section,  I listed my living parent's Drivers license / ID  info 1st and stated underneath  that my deceased parent did not have an ID.  I entered the correct  AGI from the prior year  .  I did not enter 0.  I E-filed again and Fed was accepted in less than an hour and State was accepted a few hours later.  I hope this helps those that are as frustrated as I was.  I tried many other options mentioned in the forums such as entering 0 for AGI, etc. That didn't seem to  work for the case where a taxpayer has passed away .