The IRS and states associate tax returns and payments for your return through your Social Security number. This is why when you pay a state online, you don't have to mail in a form - you filled out all the necessary information while online.
"How does that become applied to my tax return saying I have no taxes due?" I don't understand what this means...are you saying that TurboTax said that there was no tax due yet you paid it? Please explain this.
@Jmusec
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