Because your income is from a Georgia source, you are required to file your non-resident return for Georgia. There is no way to know what may trigger an inquiry by the state, but there is also no reason to believe that it will automatically be flagged as an issue.
Since your income is from a Georgia source, you may not get all of the withholdings back. There may be some tax liability for Georgia. However, if there is a tax liability for Georgia, you can claim a 'credit for taxes paid to another state' on your North Carolina return so that the income is not double-taxed by both states.
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