Yes, I had the same problem, and prior to e-filing I only paid for the federal e-filing. So I deleted the state, transmitted the federal, then that went through I redid the state and filed it separately where they charged me the additional to file. I think it may be a glitch in their filing fee, because it didn't charge me initially for both. We did my fiancés a few days before and it transmitted both, but also took both fees at the same time.
