Get your taxes done using TurboTax

Does anyone have any other thoughts on this scenario?  Funds were paid back to a traditional IRA instead of the same 401k that they came from (via indirect rollover--with proper form indicating it as an indirect rollover).  My thinking is it doesn't make any difference from a tax perspective, but not sure if the IRS would have some language indicating the pay back has to happen to the same account?  Thanks!