Get your taxes done using TurboTax

The only way to file jointly is to make  an election to be treated as a US resident for tax purposes.  This means you must report and pay US tax on all your world-wide income, not just your US income.  It's probably better in your situation to file jointly, but you need to work that out for yourselves. 

https://www.irs.gov/individuals/international-taxpayers/nonresident-alien-spouse