If your spouse filed a Married Filing Separate return, then your name and Social Security number would be required to be included as part of the return. However, only the primary taxpayer (your spouse) would be considered to have filed a tax return.
If your spouse filed a Married Filing Joint return, then your Social Security number would be in the system as having filed a return.
Take a closer look at the rejection code to see if it says your Social Security number has been used as a primary or secondary taxpayer on a return. If so, that would indicate that a joint return was filed, not a separate return. If a joint return was filed, then your share of the stimulus payment will be made jointly with your spouse's.
@comiser
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