If the IRS has a completed tax return for 2018 on file for you, they will use that information. Otherwise, they may be waiting for the processing of your information to be complete. However, the IRS has released no information regarding how issues like this are being handled.
The "Where's my Payment" tool has only been live a few hours and many taxpayers have reported that data is not there yet. I am sure data is still being uploaded into the tool.
Most IRS systems are updated during overnight hours, and I would check again tomorrow or in a few days to see if the status has changed.
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