Does the desktop version require all state tax packages to be downloaded or can I skip downloading a state I already filed separately?

I started my taxes using TT online, but may switch to the desktop version and download it. I would submit a federal and states in MA, CT, and NY. However, since I already submitted a CT return separately, I would not need to download and pay for the CT state package though. Is that okay or will it present any issues if I go ahead and switch to the desktop version to do my federal and download only the MA and NY packages? Thanks!