You should include the 1099 MISC in your income for your S-Corp. There is no separate entry screen for the 1099MISC.
So in a retail 1120S, it would be entered on the screen that says Enter Sales Infomation. You can enter and label the funds there or just put in the total sales and include the 1099MISC. This screen states " If you receive a 1099MISC or 1099k reporting your income, be sure to include in your income below any amount from Forms 1099MISC or 1099K for sales receipts."
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