You either need to e-file the corrected 1099-MISC with the IRS, or prepare a "paper" Form 1099-MISC and Form 1096 that you mail to the IRS.
TurboTax will advise you as to whether its service can e-file the corrected Form 1099-MISC.
Some providers of online 1099 filing provide the ability to file corrected forms/additional forms, and some do not.
If you are filing the "paper" route for an additional Form 1099-MISC you forgot to send, you file a new Form 1096 that includes only the new 1099.
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