What do you mean by she is being charged these taxes?
If there are no FICA taxes reported on her W-2, you would not have any related information to enter in the program. When you enter her W-2, you would enter her information as to how it was reported by her employer without changing anything. If you are referring to the income tax imposed on her portion of the income, that is different than FICA and she is subject to be taxed due to her residency has been changed from nonresident to resident. As a resident, she is required to report worldwide income including the income she made within the United States.
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