I tested entering two 1098s in TurboTax Online, and was able to use $0 for Outstanding Loan Balance as of 1/1/19 (Box 2) on the first 1098, with the Original Loan Amount in Box 2 on the second 1098.
Be sure to indicate that both 1098s are for 'the original loan used to buy..' and that you did not refinance, take a home equity loan, etc.
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