@Anonymous My reading of the original post is that the 1099-MISC income is not from the employer. It's from a third party. So it's not a repayment. The OP gets money from the third party and has to turn that money over to the employer, but the third party issues a 1099-MISC to the OP.
@ragnathor Please clarify who is paying you the 1099-MISC income. Is it from your employer, or from someone else? My earlier reply above is based on my assumption that the income is from a third party. If it's from your employer you should not pay it back and have it included in your W-2. Instead you should file Form 8919 to report income on a 1099-MISC that should have been included in your W-2.
