most likely, since you did not pay through TT, the software doesn't know that the payment was made. you can go to the tax payments worksheet and look on line 9 to see if the payment is there but I doubt it. if not, enter it but make sure it's entered in the federal column. any state extension payment needs to be entered in state column with the 2 letter ID for the state
once done and you check your return, you can efile
