If the distribution passed through your hands (as opposed to a direct trustee-to-trustee rollover), the 1099-R you receive at year's end would correctly show a Distribution Code of "7" - normal distribution.
The Distribution Code for a direct trustee-to-trustee rollover would be "G".
When you enter a 1099-R with Distribution Code 7 into TurboTax, one of the follow-up questions will ask what you did with the money. If you did a 60-day rollover of all or part of the distribution, you'll be able to indicate that to the program, and be taxed (or not taxed) accordingly.
**Answers are correct to the best of my ability but do not constitute tax or legal advice.
