Get your taxes done using TurboTax

It sounds like you are a California filer that originally chose to pay the TurboTax fees out of the Federal refund.   In California that invokes Premium Services and a 39.99 fee.  I assume you later changed payment methods without properly removing Premium Services first. 

I realize it won't help you now since you already paid, but here's how it normally is removed.  It might help someone else who sees this thread.
https://ttlc.intuit.com/questions/2154391-how-do-i-remove-the-premium-services-fee

You'll need to phone TurboTax Support during business hours for assistance with any fee/billing issue.