The 1099-Misc with an amount in Box 3 should go under Other Income, not in the Business section, since it is related to your regular job.
You can delete the entry from the Business section. This section would be to enter income/expenses from Self-Employment, where you may or may not have 1099-Misc income to report. If you did receive a 1099-Misc for self-employment, it would have an amount in Box 7, and TurboTax would prepare a Schedule C.
You also pay self-employment tax on Business income.
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