Treat the different lines as one W-2. What you will do is enter the Federal portion as normal from the Federal portion, then enter the NJ state information (NJ should have information on boxes 15-17) under State Information, and then the Philadelphia information (boxes 18-20) on the Local Wage information. You will say that the local wage information is associated with Pennsylvania.
Entering this information correctly will assist you with your NJ return. You are taxed in NJ for your income (because you live there), and in Philadelphia (because you work there), and NJ will give you a credit for the tax you pay to Philly on that income also. (Not all states give a credit for taxes paid to a locality, but NJ does).
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