I reviewed your diagnostic file and Part I, lines 7-12 are blank on your Form 5805 because you answered yes to question 2 in part I, stating that you used the annualized income installment method. When you check that box, you can't use the short method.
You can check the data source for line 13 (penalty) by right clicking and selecting data source. The penalty amount is transferred from Worksheet II, regular method and is generated by the program.
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