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You are looking at it correctly.

First the Self-Employment (SE) expenses are applied to SE income.  

Then in your example, you would have a -$2,000 for SE net income which would be added to the other income on the return.  So it would reduce that other income reported by $2,000.  

Note:  In the Self-Employed area you may see a "At Risk" question, you must be at risk to have a loss.  What this means is that you actually have to pay for the expenses incurred to get the loss.  

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