"But for field entry "Contributions [spouse] personally made (not through your employer)" ... I should have entered is $328.09."
Correct.
""do any of these situations apply? ..."[spouse] overfunded their HSA last year. "
As Opus 17 said, she did not overfund her HSA in 2024 because the excess was resolved with the return of excess contribution. 2025 TurboTax is asking about the net result for 2024, not the intermediate result where the excess had not yet been returned.
