There are two connected HSA interviews, one on the income page when you enter the 1099-SA, and one on the deductions page for medical insurance. You may need to run both interviews. If you enter some medical expenses, you might not get the question in the 1099-SA interview because Turbotax subtracts reported medical expenses from your 1099. You might need to list all your medical expenses as deductions, not just any uncovered expenses.
Otherwise, try and delete the 1099-SA and form 8889 then start over.
