My I assume that you two had Family HDHP coverage? If so, the Family contribution limit is shared by the two of you, and the contributions are calculated the same way. Offhand, I don't see why TurboTax would find an excess.
To help us out, please list the type of HDHP coverage (was it Family?), the months of coverage, the amount of HSA contributions, did you both have HSAs, or did only your spouse, the amount of your contributions, the amount of the excess, were either of you 55+, etc.
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