You can amend an amended return.
I would suggest going in and adjusting the calculation on the return to match what you used for non-school-related expenses and then sending the return in by mail along with a letter of explanation.
The only amounts that should be entered on a tax return when you receive a 1099-Q are the amounts that are not spent on qualified education expenses. The amount of the withdrawal that was spent on qualified education expenses should not even be entered on the tax return.
@SHENM
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