First of all, you would had needed to amend through SprintTax, because they handle all non-resident returns, including amended ones. Did you amend through them?
Secondly, if you did amend through SprintTax, they know that there is a tax treaty with Indonesia. TurboTax does not have the ability to prepare 1040 NR or amended ones.
I'd suggest contacting SprintTax here to see if you prepared the amendments correctly. If you have already had your returns preapred by SprintTax, rest assured these were done correctly.
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