It depends. it's possible the software isn't allowing nonpassive income to be entered correctly on Schedule E. If your K-1 has passive activity adjustments in Box 6, 7, or 8, double-check that the software is correctly linking those values to Schedule E.
If you're using TurboTax desktop, , you might need to check the K-1 worksheet section where the income and loss are reported before they flow into Schedule E. Some have had success correcting the issue at the source rather than trying to override the error directly on Schedule E.
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