Earlier you mentioned seeing a 529 distribution as income. Is that still showing? That could be the source of the extra tax.
If all of the 529 distribution was used to pay qualified expenses, return to the entry section for 1099-Q and delete it entirely. Does that fix the problem? If you have already transmitted your return to the IRS, don't do this without first starting an amended return. Instructions to do that can be found HERE.
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