Which version of TurboTax are you using? It sounds like you are using a Desktop version.
I just tested this with both TurboTax Premium Online and Home & Business Desktop, and the EIN entered in Schedule C did populate on Form 568 in the California return when the California interview questions were answered. I tried printing it to PDF both in step-by-step and Forms mode.
However, there were some instances where I tried to print and the top portion was blank as in your screenshot.
I suggest giving it another try.
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