Filed emended return for 2023, paid additional $ to IRS. However, amount paid for 2023 applied to 2024 shows emended, rather than original amount. How do I fix?

We had our 2023 refund applied to 2024 taxes. We had to file an amended return and pay additional taxes for 2023. However, now in Turbo Tax, it is showing the amended return amount from 2023 that was applied to 2024 and hasn't included the $ we paid when we amended the return. How should we fix this? (basically, we had 4500 applied to 2024 from 2023... we then paid 1500 based on the amended return), but now TT is only showing that 3000 was withheld from 2023 taxes. Should we put in the 1500 payment when it was deducted from account?