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IT-201 / line 31 is driven by adding IT-225 with a required S-xxx code. In TT, IT 225/code S-125 cannot be used/added manually. I don't see this line 31 answer as an option, really. There is no current TT solution to this state Subtraction issue. Overriding the line 28 with a total including the AMD requires a NYS paper filing in TT. Professional Tax Software can override, TT can't.  TT needs to fix this once for all via a State worksheet fix.